Overlap of significant OTUs between tested methods. — overlap_df • dar

Overlap of significant OTUs between tested methods.

Usage

overlap_df(
  rec,
  steps = steps_ids(rec, "da"),
  type = "all",
  target = NULL,
  contrast_id = NULL
)

Arguments

rec: A PrepRecipe object.
steps: Character vector with step_ids to take in account.
type: Indicates whether to use all taxa ("all") or only those that are differentially abundant in at least one method ("da"). Default as "all".
target: Optional modeled target to include.
contrast_id: Optional modeled contrast identifier to include.

Value

df

Examples

data(test_prep_rec)
df <- overlap_df(test_prep_rec, steps_ids(test_prep_rec, "da"))
head(df)
#>                        maaslin__Welsh_cake deseq__Coussin_de_Lyon
#> maaslin__Welsh_cake              1.0000000              0.6435644
#> deseq__Coussin_de_Lyon           0.6435644              1.0000000