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Overlap of significant OTUs between tested methods.

Source: R/recipe-utils.R
overlap_df.Rd

Overlap of significant OTUs between tested methods.

Usage

overlap_df(rec, steps = steps_ids(rec, "da"), type = "all")

Arguments

rec

A PrepRecipe object.

steps

Character vector with step_ids to take in account.

type

Indicates whether to use all taxa ("all") or only those that are differentially abundant in at least one method ("da"). Default as "all".

Value

df

Examples

data(test_prep_rec)
df <- overlap_df(test_prep_rec, steps_ids(test_prep_rec, "da"))
head(df)
#>                        maaslin__Welsh_cake deseq__Coussin_de_Lyon
#> maaslin__Welsh_cake              1.0000000              0.6435644
#> deseq__Coussin_de_Lyon           0.6435644              1.0000000