Plot results using UpSet plot

Usage

intersection_plt(
  rec,
  steps = steps_ids(rec, "da"),
  ordered_by = c("freq", "degree"),
  font_size = 2,
  target = NULL,
  contrast_id = NULL
)

Arguments

rec: A prepped Recipe object.
steps: Character vector with step_ids to take in account.
ordered_by: How the intersections in the matrix should be ordered by. Options include frequency (entered as "freq"), degree, or both in any order.
font_size: Size of the font.
target: Optional modeled target to include.
contrast_id: Optional modeled contrast identifier to include.

Value

UpSet plot, or invisible NULL with an informational message when no significant taxa are available for the selected hypotheses.

Examples

data(test_prep_rec)

if (requireNamespace("UpSetR", quietly = TRUE)) {
  ## UpSet plot of shared discoveries
  intersection_plt(test_prep_rec)

  ## Order intersections by the number of methods involved
  intersection_plt(test_prep_rec, ordered_by = "degree")
}
#> Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`.
#> ℹ See also `vignette("ggplot2-in-packages")` for more information.
#> ℹ The deprecated feature was likely used in the UpSetR package.
#>   Please report the issue at <https://github.com/hms-dbmi/UpSetR/issues>.
#> Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
#> ℹ Please use the `linewidth` argument instead.
#> ℹ The deprecated feature was likely used in the UpSetR package.
#>   Please report the issue at <https://github.com/hms-dbmi/UpSetR/issues>.