Extract complete sample metadata from a recipe
Value
A tibble with sample_id followed by every sample metadata column.
Samples are ordered according to phyloseq::sample_names(). If the recipe
has no sample metadata, an ID-only tibble is returned.
Examples
data(metaHIV_phy)
rec <- recipe(metaHIV_phy)
sample_data(rec)
#> # A tibble: 156 × 4
#> sample_id RiskGroup2 Cluster HIV_Status
#> <chr> <chr> <chr> <chr>
#> 1 Sample_186 msm "Prevotella" positive
#> 2 Sample_185 msm "" positive
#> 3 Sample_184 hts "Bacteroides" positive
#> 4 Sample_182 pwid "Bacteroides" positive
#> 5 Sample_181 msm "Prevotella" positive
#> 6 Sample_170 msm "Prevotella" positive
#> 7 Sample_169 msm "Prevotella" negative
#> 8 Sample_168 pwid "Bacteroides" positive
#> 9 Sample_167 hts "Bacteroides" negative
#> 10 Sample_166 msm "Prevotella" positive
#> # ℹ 146 more rows